This redwood, in Henry Cowell Redwoods State Park near Santa Cruz, might be genetically identical to some of its neighbors. Photo: kqedquest.

QUEST has an inordinate fondness for albino redwoods. It all started with the Science on the SPOT video Albino Redwoods, Ghosts of the Forest. Then there was a radio story, and a few blog posts. And last week QUEST revisited the research in two new Science on the SPOT videos about the ghosts of the forest. The video Revisiting Albino Redwoods, Cracking the Code focuses on QUEST blogger Barry Star and Stanford professor Ghia Euskirchen’s research on how the albinos are genetically different from “normal” coast redwoods. In Revisiting Albino Redwoods, Biological Mystery, Santa Cruz Professor Jarmila Pitterman wonders how albino redwoods’ total lack of chlorophyll affects their physiology and ecology. After producing all these videos, QUEST Producer Chris Bauer still had questions.

Chris saw three albino redwoods, arranged in a straight line, a short distance from one another. He wondered if these three redwoods, yards apart, might be genetically identical. Maybe they sprung from the same individual. To understand how this is even possible, you need to know about the numerous ways that redwoods can reproduce—some of which involve cloning themselves.

New redwood trees can come about in four ways: through seeds, cuttings, stump sprouts, and root sprouts.

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Like all plants, redwoods can grow from seeds. Redwood seeds come from those tiny, inch-long redwood cones that fall from the branches in autumn. Each cone contains one to two dozen tiny seeds. These seeds were fertilized with redwood pollen; they are mix of genetic material from the parent that made the seed and the parent that made the pollen. However, redwood seeds have a notoriously low germination rate. Hardly any of them will grow into a plant. Which brings us to the next method of redwood tree generation: cuttings.

Redwood trees that you buy from a nursery probably began as cuttings—branches that were cut from a tree. To make a good redwood cutting, horticulturists will cut a branch from a young tree, or sapling, because cuttings from young trees tend to survive better. They treat the cutting with hormones to encourage growth, and plant the cutting in a special blend of soils. After a few months, about 25-35% of the cuttings have formed roots; the others do not survive. Once the cuttings have established, they can grow quite quickly—up to 7 feet in height in a single growing season. Regeneration from existing branches doesn’t just happen in the nursery—it happens in nature too. When a branch falls off a redwood tree, say in a storm, the branch can come in contact with the soil and develop roots. These provide the branch with nutrients and water, and before long the branch has grown into a tree. Trees grown from cuttings or from branches are genetically identical of the tree that donated the branch. (For the same reason, California’s vineyards are very low in genetic diversity; see this article in the New York Times.)

Stump sprouts on a coast redwood. Photo: kqedquest.

Many a majestic redwood tree began as a stump sprout. Stump sprouts are tiny growths from the base of existing trees. They can grow out of a healthy tree, or a tree that has been logged or damaged by fire. Redwoods have extensive underground root systems, which are impervious to trifling things like lumberjacks’ axes and fire. Trees that grow from stumps grow quickly and have a good chance of success, because the trees are automatically connected to a large root system. Multiple stump sprouts from a single trunk form what is called a fairy ring: a ring of trees, with a circular clearing in the middle, because the original tree breaks down. Stump sprouts are generally genetic clones of the original tree. However, the albino redwoods are stump sprouts with a mutation (or two, or three…). The genomic research happening Stanford will hopefully shed some light on how this mutation happens.

A fairy ring. The ring of trees has sprouted from the moss-covered trunk in the middle. Photo: Swiv.

Redwoods don’t just sprout from stumps; they can also sprout new growth from their roots. Redwood roots extend horizontally under the soil. Many redwoods live in flood-prone ecosystems, on the banks of rivers. When redwood forests become flooded, sediment piles up on the surface of the soil, burying the roots a bit deeper than they were before. Redwoods will grow another set of horizontal roots, a little closer to the surface. By digging deep into the ground and counting the horizontal layers of roots, people can tell how many floods a redwood has endured. When new growth sprouts from the surface roots, the original tree soon has a neighbor that is basically an identical twin. This is what Chris thinks is going on with the three albino redwoods, all in a row.

Hopefully Chris can test his hypothesis in a year or two, when the redwood genome is sequenced and we know what mutation (or mutations) cause albinism. Are the three neighboring albino redwoods mutants that sprung from genetically identical trees? Maybe that tree’s genotype is just a little different from that of an albino—and the mutation that causes albinism is very likely to occur. Or maybe the three albinos are a series of chlorophyll-free coincidences. We’ll have to wait patiently for the genome data. But, for a coast redwood that can live for 2,000 years, the wait won’t be long at all.

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Maybe a clone of this guy will wander the Earth one day.A new study shows that scientists can clone a mouse that has been dead and frozen for 16 years. If they can apply what they've learned to a mammoth that has been dead and frozen for over 10,000 years, then maybe my kids can ride a mammoth one day. Or at least my grandkids can.

You Need More than DNA to Clone

Cloning isn't as simple as was shown in Jurassic Park. You can't take DNA and make a clone from it. Instead, you need an intact nucleus. And ideally, an intact nucleus in an intact cell.

The nucleus is where DNA is kept in our cells. The DNA is stored and packaged there in a way that only Mother Nature can do (for now). We can’t take our 6 feet of DNA and cram it into the tiny space of the nucleus.

Cloning 101.As I said, right now cloning uses intact cells. Here's how it works:

1) Take a cell from the animal to be cloned
2) Remove the nucleus from an egg (this is called an enucleated egg)
3) Fuse the two cells and let it divide a few times in a Petri dish
4) Implant the growing embryo into a surrogate mother
5) If everything goes well, a clone is born

This procedure requires living intact cells to be used. The problem with a frozen animal cell is that it is dead and ice crystals have torn it apart. It is not possible to fuse a beat up dead cell with an enucleated egg.

Cloning Using Frozen Cells

What the researchers in this new study did was change the protocol a bit. Instead of fusing two cells, they harvested nuclei from the frozen cells and injected them directly into the enucleated egg.

When they tried to clone the mouse that had been frozen for 16 years this way, it didn't work. But they managed to get 4 clones by adding an extra step. What they did was to make embryonic stem (ES) cells from the frozen mouse and use those cells to make a clone.

Basically they cloned the mouse but then instead of putting the embryo into a surrogate mother, they harvested its ES cells. Then they used the nuclei from these cells to create a clone in the usual way.

So we can now clone a long frozen mouse. The next step will be to try to clone an extinct animal like a mammoth.

Cloning a Mammoth is Trickier than a Mouse

Mammoth cloning will be no walk in the park. First off, we don’t have any mammoth eggs or cells to use. We'll have to use elephant ones. Hopefully, elephant eggs and/or cells will be compatible with a mammoth's nucleus. ( But there is some concern they they might not be compatible.)

Second, elephants are a lot harder to work with than mice. The experiments in this study used thousands of eggs to get a few clones. I don’t know enough about elephant biology but it seems like you'd need a lot of elephants to get that many eggs.

But this is definitely the first step in resurrecting long dead animals. For now we'll have to focus on the frozen ones. Maybe in the future researchers can figure out how to clone animals stored in formaldehyde. Or from pelts. Then we can start reviving species we humans have managed to kill off over the years.

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